IGVFFI2352UAUE

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI2352UAUE/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2352UAUE",
10    "aliases": [
11        "ansuman-satpathy:igvf_exp15_rna_10x3_NGS1_r2"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v14",
22    "content_md5sum": "07d0667f6edb46d30106e464051e9916",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-01-27T23:19:32.409869+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS8608TBPZ/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS8608TBPZ",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0003109/",
38            "term_name": "single-nucleus RNA sequencing assay"
39        },
40        "controlled_access": false,
41        "data_use_limitation_summaries": [
42            "No limitations"
43        ],
44        "file_set_type": "experimental data",
45        "samples": [
46            {
47                "@id": "/multiplexed-samples/IGVFSM1624SZQN/",
48                "@type": [
49                    "MultiplexedSample",
50                    "Sample",
51                    "Item"
52                ],
53                "accession": "IGVFSM1624SZQN",
54                "classifications": [
55                    "differentiated cell specimen",
56                    "multiplexed sample"
57                ],
58                "disease_terms": [],
59                "modifications": [],
60                "sample_terms": [
61                    {
62                        "@id": "/sample-terms/EFO_0009747/",
63                        "status": "released",
64                        "term_name": "GM25256 (WTC-11)"
65                    }
66                ],
67                "status": "released",
68                "summary": "multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples",
69                "taxa": "Homo sapiens",
70                "treatments": []
71            }
72        ],
73        "status": "released",
74        "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
75    },
76    "file_size": 21320195331,
77    "flowcell_id": "22NCFCLT3",
78    "gene_list_for": [],
79    "href": "/sequence-files/IGVFFI2352UAUE/@@download/IGVFFI2352UAUE.fastq.gz",
80    "illumina_read_type": "R2",
81    "input_file_for": [
82        "/matrix-files/IGVFFI4195HOBE/"
83    ],
84    "integrated_in": [],
85    "lab": {
86        "@id": "/labs/ansuman-satpathy/",
87        "title": "Ansuman Satpathy, Stanford"
88    },
89    "lane": 1,
90    "loci_list_for": [],
91    "maximum_read_length": 90,
92    "md5sum": "578239d75c8d770c853c016de5e422c0",
93    "mean_read_length": 90,
94    "minimum_read_length": 90,
95    "quality_metrics": [],
96    "read_count": 525579502,
97    "read_names": [
98        "Read 2"
99    ],
100    "release_timestamp": "2025-03-07T01:15:13.248567+00:00",
101    "s3_uri": "s3://igvf-files/2025/01/27/0f5900a1-e40d-4d5e-b283-2f11fead1dc0/IGVFFI2352UAUE.fastq.gz",
102    "schema_version": "15",
103    "seqspecs": [
104        "/configuration-files/IGVFFI1769ORUQ/"
105    ],
106    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
107    "sequencing_platform": {
108        "@id": "/platform-terms/EFO_0022840/",
109        "status": "released",
110        "term_name": "Illumina NovaSeq X"
111    },
112    "sequencing_run": 1,
113    "status": "released",
114    "submitted_by": {
115        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
116        "title": "Christopher Mcginnis"
117    },
118    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/igvf15/GEX/CMAS17_GEX3_S3_L001_R2_001.fastq.gz",
119    "summary": "R2 reads from sequencing run 1",
120    "upload_status": "validated",
121    "uuid": "0f5900a1-e40d-4d5e-b283-2f11fead1dc0"
122}