IGVFFI2352POTZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2246GGIL(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X029_G3_P029_L001_R2

md5sum

4b95b80cca48a9649e84d67a3f63bf65

Content MD5sum

11ef861ee37f25bd24677e722f6b2572

File Size

2.8 GB

Submitted File Name

Multiome_ATAC_X029_G3_L003_P029_S1_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

162421735

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9062CRHH

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 90 or above years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples