IGVFFI2350DXMD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0738WMFX(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X041_G8_P042_L004_R2

md5sum

a2b7fb9b6b161ba2b72728ed2d67eac6

Content MD5sum

bd67f6b73a286200c11ed289b9b76f2b

File Size

2.5 GB

Submitted File Name

Multiome_RNA_X041_G8_L008_P042_S18_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

57840500

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3938LXBP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples