IGVFFI2337EKSM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0324WVBM(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP027_G8_P075_L005_R3

md5sum

a056904658061380f32fe399c18eaa37

Content MD5sum

742c8a870022f9308525548e3d9c63a0

File Size

14 GB

Submitted File Name

Multiome_ATAC_RP027_G8_L008_P075_S32_L005_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

199698121

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5733CUKP

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 6 more samples