IGVFFI2332ZFEC

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI2332ZFEC/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2332ZFEC",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "content_md5sum": "ae762bbfa8f73414ea1d10fb77b49f87",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2023-10-10T18:57:26.509729+00:00",
22    "externally_hosted": false,
23    "file_format": "fastq",
24    "file_set": {
25        "@id": "/measurement-sets/IGVFDS4248UFKQ/",
26        "@type": [
27            "MeasurementSet",
28            "FileSet",
29            "Item"
30        ],
31        "accession": "IGVFDS4248UFKQ",
32        "assay_term": {
33            "@id": "/assay-terms/OBI_0003109/",
34            "term_name": "single-nucleus RNA sequencing assay"
35        },
36        "file_set_type": "experimental data",
37        "samples": [
38            {
39                "@id": "/multiplexed-samples/IGVFSM3306TYTX/",
40                "@type": [
41                    "MultiplexedSample",
42                    "Sample",
43                    "Item"
44                ],
45                "accession": "IGVFSM3306TYTX",
46                "classifications": [
47                    "tissue",
48                    "multiplexed sample"
49                ],
50                "disease_terms": [],
51                "modifications": [],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/UBERON_0000473/",
55                        "status": "released",
56                        "term_name": "testis"
57                    },
58                    {
59                        "@id": "/sample-terms/UBERON_0000992/",
60                        "status": "released",
61                        "term_name": "ovary"
62                    },
63                    {
64                        "@id": "/sample-terms/UBERON_0000993/",
65                        "status": "released",
66                        "term_name": "oviduct"
67                    },
68                    {
69                        "@id": "/sample-terms/UBERON_0001301/",
70                        "status": "released",
71                        "term_name": "epididymis"
72                    },
73                    {
74                        "@id": "/sample-terms/UBERON_0002369/",
75                        "status": "released",
76                        "term_name": "adrenal gland"
77                    }
78                ],
79                "status": "released",
80                "summary": "multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples",
81                "taxa": "Mus musculus",
82                "treatments": []
83            }
84        ],
85        "status": "released",
86        "summary": "Parse SPLiT-seq"
87    },
88    "file_size": 24324306984,
89    "flowcell_id": "AAC2WTJHV",
90    "gene_list_for": [],
91    "href": "/sequence-files/IGVFFI2332ZFEC/@@download/IGVFFI2332ZFEC.fastq.gz",
92    "illumina_read_type": "R2",
93    "input_file_for": [
94        "/matrix-files/IGVFFI0624XIGI/"
95    ],
96    "integrated_in": [],
97    "lab": {
98        "@id": "/labs/ali-mortazavi/",
99        "title": "Ali Mortazavi, UCI"
100    },
101    "loci_list_for": [],
102    "maximum_read_length": 86,
103    "md5sum": "c21f1d201f41600c2f4bd168cc30fce0",
104    "mean_read_length": 86,
105    "minimum_read_length": 86,
106    "quality_metrics": [],
107    "read_count": 564143439,
108    "read_names": [
109        "Read 2"
110    ],
111    "release_timestamp": "2025-04-19T18:01:52.174580+00:00",
112    "s3_uri": "s3://igvf-files/2023/10/10/666ec49d-5400-4f0d-a866-6a1d46ea995e/IGVFFI2332ZFEC.fastq.gz",
113    "schema_version": "15",
114    "seqspecs": [
115        "/configuration-files/IGVFFI3938JJYZ/"
116    ],
117    "sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
118    "sequencing_platform": {
119        "@id": "/platform-terms/EFO_0010963/",
120        "status": "released",
121        "term_name": "Illumina NextSeq 2000"
122    },
123    "sequencing_run": 5,
124    "status": "released",
125    "submitted_by": {
126        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
127        "title": "Diane Trout"
128    },
129    "submitted_file_name": "igvf_008/nextseq/igvf_008_B04_D_next_N1_R2.fastq.gz",
130    "summary": "R2 reads from sequencing run 5",
131    "upload_status": "validated",
132    "uuid": "666ec49d-5400-4f0d-a866-6a1d46ea995e"
133}