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INDEXED
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SequenceFile
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IGVFFI2329RLFP
IGVFFI2329RLFP
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6700ZMGV
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP004_G4_P054_L008_R2
md5sum
b5764cc170065c322d826dcde824476e
Content MD5sum
880f3e2afacdee0ca9cdd1509a57d343
File Size
1.8 GB
Submitted File Name
Multiome_RNA_RP004_G4_L009_P054_S31_L008_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJGLT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
41986461
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5502KZTB
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples