IGVFFI2329LIAJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1447ZIXP(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP012_G2_P060_L005_I2

md5sum

4faf0e501d31e3fab28e7e0667246ee1

Content MD5sum

d2edab19870e5f933c336b28ce779032

File Size

559 MB

Submitted File Name

Multiome_RNA_RP012_G2_L002_P060_S34_L005_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

98755719

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3226MLFV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) substantia nigra tissue; ... and 14 more samples