IGVFFI2316PPIJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8948WYQH(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G8_P041_L002_I1

md5sum

1755804a06e68db02b7e9cc1a139079a

Content MD5sum

4b4a21a0ec64233c4d293e9569cb6bd6

File Size

561 MB

Submitted File Name

Multiome_ATAC_X040_G8_L008_P041_S10_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

75822486

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7148SYPE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples