IGVFFI2316GGUC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8570TBZV(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X027_G2_P026_L002_I1

md5sum

769542734d3f8381e3ca6d8bfd114d05

Content MD5sum

ae948edcdc04f265980f5b4ccc044200

File Size

1.4 GB

Submitted File Name

Multiome_RNA_X027_G2_L002_P026_S11_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

252155235

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1917JWNL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 71 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples