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IGVFFI2312TLMW

released
validated
File Set
IGVFDS3873NRIL(Proliferation CRISPR cutting screen integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
daniel-bauer:ChrX_Screen_no_deaminase_day7_rep3_read1
md5sum
05737a6c9d234105b211d32686223b0d
Content MD5sum
a618d0e4db93f52839e10beeca170591
File Size
70 MB
Submitted File Name
/data/pinello/PROJECTS/2024_02_EC_ChrX/submitted_files/ChrX_Screen_1_#TGTAGat_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Index
TGTAGat
Average Read Length
150
Read Count
1759211

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR cutting SpRY, transduced (lentivirus) with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
guide quantifications
guide quantifications
Daniel Bauer, HSCI
345 KB
validated

Attribution

Award
HG012010
Principal Investigator(s)
Contact P.I.
Luca Pinello
Lab
Daniel Bauer, HSCI