IGVFFI2303IGIF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5005PQPM(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP031_G8_P080_L006_I1

md5sum

32b66174be0649129a4dfd4db270ac16

Content MD5sum

ed682225e55852019c7734c145ef694f

File Size

1.3 GB

Submitted File Name

Multiome_RNA_RP031_G8_L008_P080_S44_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

180931693

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9971ETBE

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples