IGVFFI2293IQWA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6861FWGU(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X026_G2_P025_L001_R2

md5sum

f019cef9a48974baeee15b56ef808dc5

Content MD5sum

c45eee53f34a46e53a49d00871e9b94c

File Size

2.3 GB

Submitted File Name

Multiome_ATAC_X026_G2_L002_P025_S3_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

136146786

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8905KCPF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples