IGVFFI2291HYYG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5875ONDA(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X047_G7_P049_L001_R3

md5sum

257562e6084b93e3752820f21f5a6930

Content MD5sum

8d88bc449c49f4986cd65aa46f5b73fa

File Size

11 GB

Submitted File Name

Multiome_ATAC_X047_G7_L007_P049_S3_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H7VW3DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

319397491

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7544TQQI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples