IGVFFI2290SDMX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0682HDZQ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP029_G5_P077_L004_R3

md5sum

99abd4bf7c26081e0bafd57d967656c2

Content MD5sum

f9e8d3580e8295cfdf422c24904ca16f

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_RP029_G5_L005_P077_S31_L004_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

71555053

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8863JLWX

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue associated with Parkinson's disease; Homo sapiens (male, 89 years) posterior cingulate gyrus tissue; ... and 6 more samples