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IGVFFI2288NVQQ

released
validated
File Set
IGVFDS0956TMWA(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 260
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2105_R1
bradley-bernstein:SS-LS_260_R1
buenrostro-bernstein:SS-LS_2105_R1
buenrostro-bernstein:SS-LS_260_R1
md5sum
36fd81edc0e9ee7aed5e8b490d41a599
Content MD5sum
095cb79d7807b5d94fc7d92be72ce1cc
File Size
203 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-187_L2_SS-PKR-131_SS-V1-LEFT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
260
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
6809843

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files Derived From This File

2 items
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
6.3 GB
validated
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
887 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2288NVQQ, IGVFFI2741HIJM
Jason Buenrostro, Broad
1.2 KB
validated