IGVFFI2283JXFN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9258PMZG(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X052_G5_P071_L007_R3

md5sum

b420c829a3acb67222e28fa50635e3a8

Content MD5sum

cefef22ef8bb05abccf38170d0ff2b2c

File Size

15 GB

Submitted File Name

Multiome_ATAC_X052_G5_L005_P071_S41_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

216574654

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3735PHFP

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples