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IGVFFI2279JMLG

released
validated
File Set
IGVFDS5515DQMD(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp5_multi_10x2_NGS1_r1
md5sum
29922b55c055e3734e8ee03db18e4e7c
Content MD5sum
675e09f7069b0e3c090d128ad92f0880
File Size
833 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF5_McGinnis/MULTI/FASTQ/MULTI_2_S22_L005_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJCLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
39680110

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
479 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2279JMLG, IGVFFI0325JFHX, IGVFFI3387DVAL, IGVFFI9711ZRTC
Ansuman Satpathy, Stanford
1.3 KB
validated