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INDEXED
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SequenceFile
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IGVFFI2278NNMZ
IGVFFI2278NNMZ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS3171AYJR
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP006_G4_P056_L007_R1
md5sum
81736b43f626c9668a5837cffba88b27
Content MD5sum
4446519b62c6bdc97689a5e56e746750
File Size
1.0 GB
Submitted File Name
Multiome_RNA_RP006_G4_L004_P056_S83_L007_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JHVLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
52701361
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9866POVO
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples