IGVFFI2277EGVU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3636ZYTF(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X041_G7_P042_L001_I2

md5sum

99dcf40c0143ca409ad2c4f05d89156b

Content MD5sum

e6ec24326882933b312236f15c60c184

File Size

325 MB

Submitted File Name

Multiome_RNA_X041_G7_L007_P042_S17_L001_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

57076837

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8345ETIT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples