IGVFFI2275CXDS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3205MIGH(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G1_P051_L006_R1

md5sum

e4808cd120fd07059a4a941256b61755

Content MD5sum

84a304a57d849a94104db0594ba0f1bd

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_RP002_G1_L001_P051_S29_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

51086932

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2125NOYE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples