IGVFFI2273MCGG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1028ZFVQ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X047_G8_P049_L001_I1

md5sum

2d28bc804a4095b71562c4ed38f132c0

Content MD5sum

e29c108fc5575ce243df061b06ec2fe7

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_X047_G8_L008_P049_S4_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H7VW3DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

201729785

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1698LTIY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 73 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples