IGVFFI2265EBBV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0356QKID(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP004_G5_P053_L001_R1

md5sum

0f03c37bf71bd03d46321ebc2d5a94b0

Content MD5sum

ef2fb9d93844c3ef7136ed5610d94a95

File Size

2.4 GB

Submitted File Name

Multiome_ATAC_RP004_G5_L005_P053_S13_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

77737277

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1516CHMP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples