IGVFFI2263TGLO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7430EPZO(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G6_P043_L007_I1

md5sum

b2de3d732c733e2ef6f80ce219124861

Content MD5sum

ec5426782650c259500c2d6e8b52a9c3

File Size

457 MB

Submitted File Name

Multiome_ATAC_X043_G6_L006_P043_S32_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

64347533

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1854LWZV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples