IGVFFI2260TZTR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8544KWZX(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G6_P077_L004_R2

md5sum

2a13498278bf24388ca697aa495eef4b

Content MD5sum

4b6017bbfb33c4931c9d44fb83004c36

File Size

948 MB

Submitted File Name

Multiome_ATAC_RP028_G6_L006_P077_S24_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55361183

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5440WCSX

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples