IGVFFI2260FAWA

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS7977FNRB(cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
R2 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
gary-hon:LW273C_1_R2
md5sum
131edca4351b91112da574f159d2da56
Content MD5sum
0da9d694b1a47f4a8522b7a3c6ed1178
File Size
1.3 GB
Submitted File Name
/project/GCRB/Hon_lab/shared/data/sequencing_data/2023/2023-12-22-McDermott-NextSeq.10X/2023-12-22/outs/fastq_path/AAF5CKNM5//LW273C_S11_L001_R2_001.fastq.gz
Checkfiles Version

Sequencing Details

Sequencing Platform
Sequencing Run
2
Flowcell ID
AAF5CKNM5
Lane
1
Illumina Read Type
R2
Average Read Length
90
Read Count
34467058

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW273), female, Homo sapiens modified with CRISPRi Sp-dCas9, transfected with a guide library

Files Derived From This File

2 items
hdf5
filtered feature barcode matrix
cell by UMI count in filtered feature barcode matrix
Gary Hon, UT
425 MB
validated
pkl
raw feature barcode matrix
cell by CRISPR guide capture in raw feature barcode matrix
Gary Hon, UT
789 MB
validated

Attribution