IGVFFI2259OCCH

released
validated
File Set
IGVFDS1293ORGQ(unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-FACS_Input-PCRrep2_R2
md5sum
a2da524283b1074cf05d8e7acb4341bb
Content MD5sum
5e589baf108efa2f21dfe11895039532
File Size
74 MB
Submitted File Name
220228pPPIF-FFSample-6-D21-pPPIF-Amp-pPPIF-2-1-2-BinAll_R2_001.fastq.gz
Checkfiles Version
Attribution

Sequencing Details

Sequencing Platform
Sequencing Run
1
Illumina Read Type
R2
Index
GTCGCCTT:TGAC
Average Read Length
150
Read Count
1877214

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transduced (lentivirus) with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
variant effects
hg19 variant effects
Jesse Engreitz, Stanford
2.4 KB
validated