IGVFFI2257MZBJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6736XGHP(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP008_G5_P057_L004_R2

md5sum

dec5b98f7154738f7f305dfb1319358a

Content MD5sum

5e07713d5055eb0eb6acb80ff40587c0

File Size

582 MB

Submitted File Name

Multiome_ATAC_RP008_G5_L005_P057_S5_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

32849782

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1888IYGT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples