{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI2256WABA/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI2256WABA",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinC-PCRrep1_I1"
],
"assay_titles": [
"Variant FlowFISH"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released sequence file [IGVFFI2256WABA](/sequence-files/IGVFFI2256WABA/) has in progress subobject auxiliary set [IGVFDS7873WZQT](/auxiliary-sets/IGVFDS7873WZQT/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/sequence-files/IGVFFI2256WABA/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "77a001f7a57702258061aac96f6729e1",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T15:26:23.132552+00:00",
"file_format": "fastq",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS7873WZQT/",
"accession": "IGVFDS7873WZQT",
"file_set_type": "variant sequencing",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM8798UNXX/",
"accession": "IGVFSM8798UNXX",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002796/",
"term_name": "Jurkat"
}
],
"summary": "Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 51-75% expression of PPIF) modified with a guide library",
"taxa": "Homo sapiens"
}
],
"summary": "variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus"
},
"file_size": 2612719,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI2256WABA/@@download/IGVFFI2256WABA.fastq.gz",
"illumina_read_type": "I1",
"index": "CCAGTTAG:GTCA",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"maximum_read_length": 8,
"md5sum": "e2821abb968e5174d4513af76f2c989f",
"mean_read_length": 8,
"minimum_read_length": 8,
"read_count": 296832,
"release_timestamp": "2023-12-21T01:04:43.918229+00:00",
"s3_uri": "s3://igvf-files/2023/12/13/4a1c3065-a61c-47d4-948e-0cd500a73108/IGVFFI2256WABA.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008566/",
"term_name": "Illumina NextSeq 550"
},
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep4_BinC-PCRrep1_S169_I1_001.fastq.gz",
"summary": "I1 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "4a1c3065-a61c-47d4-948e-0cd500a73108"
}