IGVFFI2251SXJY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4312PQZQ(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X053_G1_P072_L008_R2

md5sum

8c9bc2e4f850c734ff20004309c5bb54

Content MD5sum

48983f68498b249be261dd8ac6747209

File Size

7.5 GB

Submitted File Name

Multiome_RNA_X053_G1_L001_P072_S65_L008_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

151

Read Count

112097822

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5769JWBA

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 73 years) middle temporal gyrus tissue; ... and 8 more samples