IGVFFI2249RPJC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1013LBEZ(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X028_G7_P028_L004_I2

md5sum

2c822ad881dfff75cf14ad6260b8f3f5

Content MD5sum

271d01971c147d8b13d704f97519fa0c

File Size

1.7 GB

Submitted File Name

Multiome_RNA_X028_G7_L007_P028_S24_L004_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

257964363

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2664KMPG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples