IGVFFI2245OBXG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8187GTTC(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP030_G8_P077_L006_R3

md5sum

8266db4108d0fde961d271376fea3b98

Content MD5sum

b9df4dbec3a595c1ec98a85c5e0a76a5

File Size

2.4 GB

Submitted File Name

Multiome_ATAC_RP030_G8_L008_P077_S42_L006_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

79286138

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3517DKCV

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 6 more samples