IGVFFI2232JXAS

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI2232JXAS/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI2232JXAS",
    "aliases": [
        "charles-gersbach:measurement-set-bulk-atac-chir4um-ipsc-cm-rep3-R2"
    ],
    "assay_titles": [
        "ATAC-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012053/",
        "component": "functional characterization"
    },
    "content_md5sum": "13037038f270be5532a5ad7e4d0da91d",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-10-23T19:29:02.095334+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS8881TVYW/",
        "accession": "IGVFDS8881TVYW",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM5361EAGX/",
                "accession": "IGVFSM5361EAGX",
                "classifications": [
                    "differentiated cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000746/",
                    "status": "released",
                    "term_name": "cardiac muscle cell"
                },
                "taxa": "Homo sapiens",
                "treatments": [
                    {
                        "@id": "/treatments/98ba0c5c-8005-41bc-bcbb-6c6eff41af4e/",
                        "purpose": "antagonist",
                        "status": "released",
                        "summary": "Treatment of 4 μM GSK3 inhibition for 7 days",
                        "treatment_term_name": "GSK3 inhibition"
                    }
                ]
            }
        ],
        "status": "released",
        "summary": "ATAC-seq"
    },
    "file_size": 3422410375,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI2232JXAS/@@download/IGVFFI2232JXAS.fastq.gz",
    "illumina_read_type": "R2",
    "input_file_for": [
        "/alignment-files/IGVFFI4382XXOK/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/charles-gersbach/",
        "title": "Charles Gersbach, Duke"
    },
    "loci_list_for": [],
    "maximum_read_length": 51,
    "md5sum": "b97b64209dfb82642da8f33005d92745",
    "mean_read_length": 51,
    "minimum_read_length": 51,
    "read_count": 108947996,
    "release_timestamp": "2024-12-03T20:43:51.167198+00:00",
    "s3_uri": "s3://igvf-files/2024/10/23/03cc9700-aa67-4fa9-aab0-eb7fe04d9ada/IGVFFI2232JXAS.fastq.gz",
    "schema_version": "14",
    "seqspecs": [],
    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0008637/",
        "status": "released",
        "term_name": "Illumina NovaSeq 6000"
    },
    "sequencing_run": 2,
    "status": "released",
    "submitted_by": {
        "@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
        "title": "Ruhi Rai"
    },
    "submitted_file_name": "/datacommons/gersbachlab/tda17/Anglen_7276_210923B6/data/atac_seq/processed_raw_reads/Anglen_7276_210923B6/CHRIR4uM_3.R2.fastq.gz",
    "summary": "R2 reads from sequencing run 2",
    "upload_status": "validated",
    "uuid": "03cc9700-aa67-4fa9-aab0-eb7fe04d9ada"
}