IGVFFI2231NKBN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8528XJMX(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP018_G1_P063_L005_R1

md5sum

5ab08c2e204fd0aa81de4e185bf3323b

Content MD5sum

b8ad466163d03243408fa35adc5a9bfe

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_RP018_G1_L001_P063_S29_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63027339

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3143GHVU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples