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IGVFFI2227QTWF

released
validated
File Set
IGVFDS0054DMAW(CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jay-shendure:CRISPRa_singlevalidations_neurons_HMGA1_rep1_R2
md5sum
21a0d2707b912d8eb5958bf202d44121
Content MD5sum
504223fb48e5aaca17aa31ce737ec1b9
File Size
124 MB
Submitted File Name
/net/shendure/vol10/projects/IGVFtemp/pooled_fastqs/Neuron_gRNA_9_Rep_1_HMGA1_S21_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jay Shendure, UW

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Lane
1
Sequencing Kit
NextSeq 1000/2000 P1 Reagent Kit
Average Read Length
110
Read Count
2110459

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to neuron for 19 days modified with CRISPRa Sp-dCas9-VPH, transfected with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
differential gene expression quantifications
differential gene expression quantifications
Jay Shendure, UW
39 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2227QTWF
Jay Shendure, UW
1.0 KB
validated