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INDEXED
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SequenceFile
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IGVFFI2225YZOZ
IGVFFI2225YZOZ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4220YBNS
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I1 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP006_G1_P056_L003_I1
md5sum
9494fd1d0bb1bd99f965db5405cb28e7
Content MD5sum
39a90f4ab94c5268b440ac9f59604884
File Size
335 MB
Submitted File Name
Multiome_RNA_RP006_G1_L001_P056_S21_L003_I1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
2
Flowcell ID
225LGWLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
61266625
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7010YPUF
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples