IGVFFI2225ESTU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3248CAFJ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G3_P051_L007_R3

md5sum

802a9da140a43f58bf4894f69b0328a9

Content MD5sum

3157147c8482ab9c298563c2c514a83d

File Size

2.5 GB

Submitted File Name

Multiome_ATAC_RP002_G3_L009_P051_S31_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

86191655

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6307OPWX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples