IGVFFI2225CNCU

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4211LHWC(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X024_G4_P023_L003_R1

md5sum

f0c025b1d639ff0b06801619d61c8a88

Content MD5sum

21ebdfc2904be86389073a52e98ac4ac

File Size

7.2 GB

Submitted File Name

Multiome_ATAC_X024_G4_L004_P023_S28_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

228090533

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4164CREL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples