IGVFFI2223FWVN

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI2223FWVN/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2223FWVN",
10    "aliases": [
11        "igvf:corces_sequenceFile_ATAC_X004_G3_P003_L004_R1"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "49b4d3b2e78b00743b613550ecd0896b",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-03-20T00:39:02.785396+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS5735HWHA/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS5735HWHA",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002762/",
38            "term_name": "single-nucleus ATAC-seq"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/tissues/IGVFSM9133DPZS/",
44                "@type": [
45                    "Tissue",
46                    "Biosample",
47                    "Sample",
48                    "Item"
49                ],
50                "accession": "IGVFSM9133DPZS",
51                "classifications": [
52                    "tissue"
53                ],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/UBERON_0002129/",
57                        "status": "preview",
58                        "term_name": "cerebellar cortex"
59                    }
60                ],
61                "status": "preview",
62                "summary": "Homo sapiens (male, 86 years) cerebellar cortex tissue",
63                "taxa": "Homo sapiens"
64            }
65        ],
66        "status": "preview",
67        "summary": "single-nucleus ATAC-seq (10x multiome)"
68    },
69    "file_size": 5987513802,
70    "flowcell_id": "H5TH7DSX5",
71    "gene_list_for": [],
72    "href": "/sequence-files/IGVFFI2223FWVN/@@download/IGVFFI2223FWVN.fastq.gz",
73    "illumina_read_type": "R1",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/ryan-corces/",
78        "title": "Ryan Corces, Gladstone Institute UCSF"
79    },
80    "lane": 4,
81    "loci_list_for": [],
82    "maximum_read_length": 50,
83    "md5sum": "7bf41d5cd0d0a65dedcdd6f5742b31a7",
84    "mean_read_length": 50,
85    "minimum_read_length": 50,
86    "quality_metrics": [],
87    "read_count": 213918626,
88    "read_names": [
89        "Read 1"
90    ],
91    "s3_uri": "s3://igvf-files/2025/03/20/c0e11e07-7586-4779-9f75-5c404b15ea42/IGVFFI2223FWVN.fastq.gz",
92    "schema_version": "15",
93    "seqspecs": [],
94    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
95    "sequencing_platform": {
96        "@id": "/platform-terms/EFO_0008637/",
97        "status": "released",
98        "term_name": "Illumina NovaSeq 6000"
99    },
100    "sequencing_run": 1,
101    "status": "preview",
102    "submitted_by": {
103        "@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
104        "title": "Ryan Corces"
105    },
106    "submitted_file_name": "Multiome_ATAC_nd_02-27_CBL_X004_S03_L003_B1_T1_P003_S17_L004_R1_001.fastq.gz",
107    "summary": "R1 reads from sequencing run 1",
108    "upload_status": "validated",
109    "uuid": "c0e11e07-7586-4779-9f75-5c404b15ea42"
110}