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SequenceFile
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IGVFFI2210BQAO
IGVFFI2210BQAO
released
validated
Json view
File Set
IGVFDS4942IIYS
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp5_rna_10x1_NGS2_r1
md5sum
70f56e56694308613ec1c6a7a06de13b
Content MD5sum
4b00b5247032f14abd12f8d3d6facf20
File Size
5.8 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF5_McGinnis/GEX/FASTQ/GEX_1_S17_L006_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJCLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
302229247
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM1143WWLK
MultiplexedSample
GM25256 (WTC-11)
,
H1-hESC
,
H9
,
HEK293T
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI3992LEUW
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
200 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2040CSJU
yaml
seqspec
seqspec of IGVFFI0560CIZS, IGVFFI7029DELQ, IGVFFI9942CBQB, IGVFFI2210BQAO
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford