IGVFFI2209VZTE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9558NTBE(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G6_P065_L006_I1

md5sum

177e4080750c055f12a180039076e1fb

Content MD5sum

3682943102292cb6525d326e52d56690

File Size

402 MB

Submitted File Name

Multiome_ATAC_X050_G6_L006_P065_S36_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

53726247

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8373BGDE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples