IGVFFI2207PQVC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1279DJVE(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 2

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP011_G3_P074_L003_R1

md5sum

12b61faf439ea55e98eb299f2a5bb302

Content MD5sum

6825c7bd3c9952883276fe46e11c906b

File Size

16 GB

Submitted File Name

Multiome_RNA_RP011_G3_L011_P074_S39_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19UBCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

151

Read Count

190644373

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0695RJYV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples