IGVFFI2197JQZH

released

validated

File Set

IGVFDS3348ANJX(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_CCND1_Auxin0hrs-FF1-BinB-PCR2-Rep1_S224

md5sum

d4cc31a67be1ae20cf1e78c4b4140f46

Content MD5sum

21b9833b2b08b0394b1d6b5d8c82bf16

File Size

17 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220308B014_CCND1_SSFA2_FAM3C/fastq_trim/CCND1-Auxin0hrs-FF1-BinB-PCR2-Rep1_S224_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

TATCCAGG:TTGA

Average Read Length

Read Count

791564

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM4779RXHT

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library