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INDEXED
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SequenceFile
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IGVFFI2187HZUJ
IGVFFI2187HZUJ
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS0646FGSI
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP006_G7_P056_L003_R2
md5sum
9a2ca3e9f038c21e3c184b87294789b2
Content MD5sum
28f0f5157f350faf0fbd4e088b8c0216
File Size
2.5 GB
Submitted File Name
Multiome_RNA_RP006_G7_L007_P056_S27_L003_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
2
Flowcell ID
225LGWLT3
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Average Read Length
90
Read Count
58712943
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM6003RYZR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples