IGVFFI2185ZXQY

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI2185ZXQY/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2185ZXQY",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "content_md5sum": "d9e45893efbb8afa9ec2987dcc3fb2ac",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2023-08-25T22:11:32.474396+00:00",
22    "externally_hosted": false,
23    "file_format": "fastq",
24    "file_set": {
25        "@id": "/measurement-sets/IGVFDS6946BUZB/",
26        "@type": [
27            "MeasurementSet",
28            "FileSet",
29            "Item"
30        ],
31        "accession": "IGVFDS6946BUZB",
32        "assay_term": {
33            "@id": "/assay-terms/OBI_0003109/",
34            "term_name": "single-nucleus RNA sequencing assay"
35        },
36        "file_set_type": "experimental data",
37        "samples": [
38            {
39                "@id": "/multiplexed-samples/IGVFSM9603DIDI/",
40                "@type": [
41                    "MultiplexedSample",
42                    "Sample",
43                    "Item"
44                ],
45                "accession": "IGVFSM9603DIDI",
46                "classifications": [
47                    "tissue",
48                    "multiplexed sample"
49                ],
50                "disease_terms": [],
51                "modifications": [],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/NTR_0000646/",
55                        "status": "released",
56                        "term_name": "left cerebral cortex"
57                    }
58                ],
59                "status": "released",
60                "summary": "multiplexed sample: Mus musculus CAST/EiJ (female, 72 days) left cerebral cortex tissue; Mus musculus C57BL/6J (male, 72 days) left cerebral cortex tissue; ... and 6 more samples",
61                "taxa": "Mus musculus",
62                "treatments": []
63            }
64        ],
65        "status": "released",
66        "summary": "Parse SPLiT-seq"
67    },
68    "file_size": 6674177945,
69    "flowcell_id": "AAC2L2NHV",
70    "gene_list_for": [],
71    "href": "/sequence-files/IGVFFI2185ZXQY/@@download/IGVFFI2185ZXQY.fastq.gz",
72    "illumina_read_type": "R2",
73    "input_file_for": [
74        "/matrix-files/IGVFFI6356ADHE/",
75        "/matrix-files/IGVFFI2560RYCC/"
76    ],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/ali-mortazavi/",
80        "title": "Ali Mortazavi, UCI"
81    },
82    "lane": 1,
83    "loci_list_for": [],
84    "maximum_read_length": 86,
85    "md5sum": "5d609040b78f9060c49a4a757c82af68",
86    "mean_read_length": 86,
87    "minimum_read_length": 86,
88    "quality_metrics": [],
89    "read_count": 158630723,
90    "read_names": [
91        "Read 2"
92    ],
93    "release_timestamp": "2024-05-08T23:38:39.503239+00:00",
94    "s3_uri": "s3://igvf-files/2023/08/25/c9c3c559-3689-4e8d-84f5-fd71c6dfe551/IGVFFI2185ZXQY.fastq.gz",
95    "schema_version": "15",
96    "seqspecs": [
97        "/configuration-files/IGVFFI5693YBRI/"
98    ],
99    "sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
100    "sequencing_platform": {
101        "@id": "/platform-terms/EFO_0010963/",
102        "status": "released",
103        "term_name": "Illumina NextSeq 2000"
104    },
105    "sequencing_run": 1,
106    "status": "released",
107    "submitted_by": {
108        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
109        "title": "Diane Trout"
110    },
111    "submitted_file_name": "igvf_b01/next1/igvf_b01_B04_D_next_N1_R2.fastq.gz",
112    "summary": "R2 reads from sequencing run 1",
113    "upload_status": "validated",
114    "uuid": "c9c3c559-3689-4e8d-84f5-fd71c6dfe551"
115}