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INDEXED
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SequenceFile
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IGVFFI2165BJBU
IGVFFI2165BJBU
preview
validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS6082PVJJ
(single-nucleus ATAC-seq (10x multiome))
Summary
R1 reads from sequencing run 425
File Format
fastq
Content Type
reads
Aliases
jimmie-ye:XX4-SC3_snATAC_S1_R1
md5sum
d07fc665f02f66e6e23d3ea2078dd40c
Content MD5sum
6b6b6ff058d046ff820e5d9aed643f49
File Size
6.1 GB
Submitted File Name
production_data/xhlt1/data/single_cell_ATAC/raw/XHLT1-POOL-XX4-SC3/AHM2T2DSX2/XHLT1-POOL-XX4-SC3-ATAC_S15_L004_R1_001.fastq.gz
Checkfiles Version
v17
Attribution
Jimmie Ye, UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
425
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
204222459
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9062JXMC
MultiplexedSample
peripheral blood mononuclear cell
multiplexed sample: Homo sapiens (female, 25.0 years) peripheral blood mononuclear cell; Homo sapiens (female, 24.0 years) peripheral blood mononuclear cell; ... and 18 more samples