IGVFFI2162SKDF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0887WUCN(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X055_G2_P073_L003_R1

md5sum

ab199b1eb7ed906dbba8c2b08406dba9

Content MD5sum

a9ac84afe488a6c2d86e80d1296fde2c

File Size

19 GB

Submitted File Name

Multiome_ATAC_X055_G2_L002_P073_S2_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

265694613

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4337BEFD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 74 years) cerebellar cortex tissue; ... and 8 more samples