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INDEXED
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SequenceFile
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IGVFFI2154PJUR
IGVFFI2154PJUR
released
validated
Json view
File Set
IGVFDS5274ZJXU
(reporter library targeting random selections genome-wide)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
tim-reddy:starr-seq-dna-fastq-k562-P018-R1
md5sum
446eb85281806755a3ecb6de31b00b45
Content MD5sum
0c9434dc806f3dcef6e15d29b8ac3557
File Size
6.3 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.dna.pool18.R1.fastq.gz
Checkfiles Version
v17
Attribution
Tim Reddy, Duke
(
HG012053
—
Charles Gersbach
)
Sequencing Details
Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AACNYKVM5
Lane
1
Sequencing Kit
NextSeq 2000 P3 XLEAP-SBS Reagent Kit
Illumina Read Type
R1
Average Read Length
301
Read Count
45004782
Files Derived From This File
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI8142PODV
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
6.0 GB
validated
IGVFFI9692WJUO
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
6.3 GB
validated