IGVFFI2147ZHGT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2960OTKR(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X033_G7_P034_L002_R1

md5sum

c019e4409335e1d960db9b101335409a

Content MD5sum

23cd49da0ee25ea42d42872ae9f30105

File Size

15 GB

Submitted File Name

Multiome_RNA_X033_G7_L007_P034_S23_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

223985039

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7219TNMN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue; ... and 10 more samples