IGVFFI2129MNTF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6182VLTG(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G1_P051_L007_R1

md5sum

40e30c310b02e77e9e743694f12f7b88

Content MD5sum

a641914b8456f30cce6223c35cdb159d

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_RP001_G1_L001_P051_S21_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

68998202

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7927MDCD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples