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IGVFFI2105ICHL

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4024LHFB(single-nucleus ATAC-seq (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
harinder-singh:donor1_Bcell_multiome_ATAC_NGS_day0_2_L001_R1
md5sum
41843405618aab081669512a89bf4f1e
Content MD5sum
21c249801187d24ebad43e8aa91c3b0a
File Size
4.2 GB
Submitted File Name
/ix/djishnu/peasena/primary_multiome/donor1_upmc/fastqs/scATAC/NP002_01_120222_Singh_Multiome_scATAC_remade_SIN4251A4_S1_L001_R1_001.fastq.gz
Checkfiles Version
v17
Attribution
Harinder Singh, University of Pittsburgh

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Lane
1
Sequencing Kit
NovaSeq 6000 S1 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
130902645

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days

Files Derived From This File

3 items
tsv
fragments
fragments
Harinder Singh, University of Pittsburgh
1.8 GB
validated
hdf5
raw feature barcode matrix
cell by gene expression in raw feature barcode matrix
Harinder Singh, University of Pittsburgh
393 MB
validated
csv
barcode to element mapping
barcode to element mapping
Harinder Singh, University of Pittsburgh
17 MB
validated